See
Genome Information for Thalassiosira oceanica
Diatom Thalassiosira oceanica shows a remarkable tolerance to low-iron conditions and was chosen as a model for deciphering the cellular response upon shortage of this essential micronutrient. The combined efforts in genomics, transcriptomics and proteomics of Thalassiosira oceanica reveal an unexpected metabolic flexibility in response to iron availability for Thalassiosira.
| Accession | PRJNA174437 |
| Type | Umbrella project (Subtype:Disease) |
| Organism | Thalassiosira oceanica CCMP1005[Taxonomy ID: 637379] Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira oceanica; Thalassiosira oceanica CCMP1005 |
| Publications | Lommer M et al., "Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation.", Genome Biol, 2012 Jul 26;13(7):R66 |
| Submission | Registration date: 5-Sep-2012
NCBI |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 31232 |
| WGS master | 1 |
| Genomic DNA | 1 |
| Transcript | 9612 |
| SRA Experiments | 5 |
| Protein Sequences | 34642 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 5 |
| Assembly | 1 |
Thalassiosira oceanica CCMP1005 encompasses the following 2 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Contigs |
1
|
|
| Transcriptome or Gene expression | 1 |
|