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Accession: PRJNA174404 ID: 174404

Homo sapiens (human)

iMir: An integrated pipeline for high-throughput miRNA-Seq data analysis

See Genome Information for Homo sapiens
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66644 additional projects are related by organism.
We report a novel modular pipeline (iMir) for comprehensive analysis of miRNA-Seq data, from linker removal and sequence quality check to differential expression and biological target prediction, integrating multiple open source modules and resources linker together in an automated flow. More...
AccessionPRJNA174404; GEO: GSE40617
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
PublicationsGiurato G et al., "iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.", BMC Bioinformatics, 2013 Dec 13;14:362
SubmissionRegistration date: 5-Sep-2012
University of Salerno
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments6
Publications
PubMed1
PMC1
Other datasets
BioSample6
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases1
Data volume, Mbytes596

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