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Accession: PRJNA173773 ID: 173773

Plasmodium falciparum Multi-isolate project for SNP discovery

See Genome Information for Plasmodium falciparum
We are sequencing 25 strains of Plasmodium falciparum. They will be indexed and pooled: 101 bp PE reads; 35X coverage for SNP discovery. We will be submitting traces and SNP calls.
AccessionPRJNA173773
TypeUmbrella project (Subtype:Disease)
OrganismPlasmodium falciparum[Taxonomy ID: 5833]
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania); Plasmodium falciparum
SubmissionRegistration date: 24-Aug-2012
Broad Institute
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments203
Other datasets
BioSample105
SRA Data Details
ParameterValue
Data volume, Gbases362
Data volume, Tbytes0.39
This project encompasses the following 45 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace

44
BioProject
accession		Assembly
level		OrganismTitle
PRJNA173737 SRA or TracePlasmodium falciparum 803_H2Genome Sequencing of Plasmodium falciparum Senegal strains (Broad Institute)
PRJNA173727 SRA or TracePlasmodium falciparum B1E4_6273_2clone2Genome Sequencing of Plasmodium falciparum Senegal strains (Broad Institute)
PRJNA173739 SRA or TracePlasmodium falciparum Cp803Genome Sequencing of Plasmodium falciparum Senegal strains (Broad Institute)
PRJNA173734 SRA or TracePlasmodium falciparum SenT015.09.cGenome Sequencing of Plasmodium falciparum Senegal strains (Broad Institute)
PRJNA173740 SRA or TracePlasmodium falciparum SenT016.10.dGenome Sequencing of Plasmodium falciparum Senegal strains (Broad Institute)
List all 44 'Genome sequencing' projects...
Variation1
BioProject
accession		OrganismTitle
PRJNA51255Plasmodium falciparumPlasmodium falciparum Multi-isolate project for SNP discovery (Broad Institute)

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