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Total RNA of 24 SCC tumors were isolated and profiled for mRNA expression measurement with Agilent 4x44K Array
Overall design: Tumor samples were assayed on Agilent Human gene expression 4x44K Microarray with manufacturer's recommended procedures for microarray-based one-color.
| Accession | PRJNA172747; GEO: GSE40074 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | - Qian J et al., "Global gene expression profiling reveals a suppressed immune response pathway associated with 3q amplification in squamous carcinoma of the lung.", Genom Data, 2015 Sep;5:272-4
- Qian J et al., "The RNA binding protein FXR1 is a new driver in the 3q26-29 amplicon and predicts poor prognosis in human cancers.", Proc Natl Acad Sci U S A, 2015 Mar 17;112(11):3469-74
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| Submission | Registration date: 13-Aug-2012
Vanderbilt Ingram Cancer Center, Vanderbilt University |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 986184 |
| Data volume, Processed Mbytes | 23 |
| Data volume, Supplementary Mbytes | 141 |