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Accession: PRJNA171027 ID: 171027

Differences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation

This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series
AccessionPRJNA171027; GEO: GSE39523
TypeUmbrella project
PublicationsPlasschaert RN et al., "CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation.", Nucleic Acids Res, 2014 Jan;42(2):774-89
SubmissionRegistration date: 20-Jul-2012
Alexander Gimelbrant, Cancer Biology, Dana-Farber Cancer Institute
RelevanceSuperseries
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments9
Publications
PubMed1
PMC1
Other datasets
BioSample9
GEO DataSets3
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1066
SRA Data Details
ParameterValue
Data volume, Gbases4
Data volume, Mbytes2549
This project encompasses the following 2 sub-projects:
Project TypeNumber of Projects
Epigenomics1
BioProject
accession
OrganismTitle
PRJNA171028Mus musculusDifferences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [ChIP-Seq] (Alexander Gimelbrant, Cancer...)
Transcriptome or Gene expression1
BioProject
accession
OrganismTitle
PRJNA171029Mus musculusDifferences in CTCF binding site sequence are associated with unique regulatory and functional trends during embryonic stem cell differentiation [RNA-Seq] (Alexander Gimelbrant, Cancer...)

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