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Accession: PRJNA170872 ID: 170872

Oryza sativa Japonica Group (Japanese rice)

Continuous gene expression profile of root at daytime throughout the entire growth of rice in the field

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A continuous gene expression profiling of roots was performed during daytime at regular interval from transplanting until harvesting to characterize the transcriptional and physiological changes in the root system of rice throughout the entire growth under natural field conditions. More...
AccessionPRJNA170872; GEO: GSE39424
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismOryza sativa Japonica Group[Taxonomy ID: 39947]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group
Publications
  • Sato Y et al., "RiceXPro version 3.0: expanding the informatics resource for rice transcriptome.", Nucleic Acids Res, 2013 Jan;41(Database issue):D1206-13
  • Sato Y et al., "RiceFREND: a platform for retrieving coexpressed gene networks in rice.", Nucleic Acids Res, 2013 Jan;41(Database issue):D1214-21
SubmissionRegistration date: 17-Jul-2012
National Institute of Agrobiological Sciences
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Publications
PubMed2
PMC2
Other datasets
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Spots632114
Data volume, Processed Mbytes10
Data volume, Supplementary Mbytes108

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