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Accession: PRJNA170871 ID: 170871

Oryza sativa Japonica Group (Japanese rice)

Diurnal and circadian gene expression profile of root throughout the entire growth of rice in the field

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A continuous gene expression profiling of roots was performed at regular interval during a 48-hr period in 2 different growth stages to characterize the diurnal and circadian gene expression profile of rice growth under natural field conditions. More...
AccessionPRJNA170871; GEO: GSE39423
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismOryza sativa Japonica Group[Taxonomy ID: 39947]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa Japonica Group
Publications
  • Sato Y et al., "RiceXPro version 3.0: expanding the informatics resource for rice transcriptome.", Nucleic Acids Res, 2013 Jan;41(Database issue):D1206-13
  • Sato Y et al., "RiceFREND: a platform for retrieving coexpressed gene networks in rice.", Nucleic Acids Res, 2013 Jan;41(Database issue):D1214-21
SubmissionRegistration date: 17-Jul-2012
National Institute of Agrobiological Sciences
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Publications
PubMed2
PMC2
Other datasets
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Spots2257550
Data volume, Processed Mbytes36
Data volume, Supplementary Mbytes384

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