Bos taurus (ID 169504) - BioProject

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Accession: PRJNA169504 ID: 169504

Bos taurus (cattle)

ChIP-seq of bovine cells (MDBK) to study butyrate-induced histone modification

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1336 additional projects are related by organism.

Utilizing next-generation sequencing technology, combined with ChIP (Chromatin Immunoprecipitation) technology to analyze histone modification (acetylation) induced by butyrate and to map the epigenomic landscape of normal histone H3, H4 Overall design: Cells were treated with 10 mM butyrate for 24 hr, The cells were scraped from the flask and homogenized with ice-cold Dounce homogenizer to release the nuclei. More...

Accession	PRJNA169504; GEO: GSE38973
Data Type	Epigenomics
Scope	Multiisolate
Organism	Bos taurus[Taxonomy ID: 9913] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus
Publications	Shin JH et al., "Butyrate Induced IGF2 Activation Correlated with Distinct Chromatin Signatures Due to Histone Modification.", Gene Regul Syst Bio, 2013;7:57-70
Submission	Registration date: 27-Jun-2012 BFGL, ARS, USDA
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	10
Publications
PubMed	1
PMC	1
Other datasets
BioSample	10
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	2756

SRA Data Details

Parameter	Value
Data volume, Gbases	11
Data volume, Mbytes	7416

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Bos taurus (cattle)

ChIP-seq of bovine cells (MDBK) to study butyrate-induced histone modification

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