See
Genome Information for Macaca mulatta
Cells from SIV-negative (SIVnegative_p17, n=5; SIVnegative_p18, n=5) and SIV-chronic (ChronicSIVinfection_p18, n=6) SP tissues were sorted for microarray studies. RNA samples were prepared using the Illumina beads station assay and hybridized to the Illumina HumanHT-12 version 4 Expression BeadChip according to the Illumina’s instruction. The data were normalized with the quantile normalization method of Bioconductor package limma . Missing values were imputed with R package impute (http://cran.rproject.org/web/packages/impute/index.html). Genes with significant differential expression levels were identified using Bioconductor limma package with >= 1.5 fold change (up or down), the false discovery rate (FDR) adjusted P value < 0.05.
Overall design: Cells from SIV-negative (SIV and SIV-chronic SP) tissues were sorted for micorarray studies
| Accession | PRJNA168976; GEO: GSE38795 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Macaca mulatta[Taxonomy ID: 9544] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta |
| Publications | Petrovas C et al., "CD4 T follicular helper cell dynamics during SIV infection.", J Clin Invest, 2012 Sep;122(9):3281-94 |
| Submission | Registration date: 19-Jun-2012
VGTI, FL |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 755696 |
| Data volume, Processed Mbytes | 25 |
| Data volume, Supplementary Mbytes | 3 |