Description of Arenaviridae
adapted from
ICTVdb
Virion Properties
Morphology
Virions consist of an
envelope and a nucleocapsid. Virus capsid is enveloped. Virions
are spherical to pleomorphic measuring (50-)110-130(-300) nm in
diameter. The envelope surrounds probably two nucleocapsids; has
surface projections. Surface projections are distinctive
club-shaped peplomers that are spaced widely apart and covering
evenly the surface; embedded in a lipid bilayer which is
comprises surface glycoproteins (GP). Surface projections are
composed of one type of protein. Surface projections are 8-10 nm
long. Host ribosomes are seen inside the envelope (in varying
numbers). Capsid/nucleocapsid is elongated with helical symmetry.
Virions consist of two nucleocapsids. The nucleocapsid is
filamentous and forming a closed circle; has a "string of beads"
appearance; with a varying length with a length of 1000-1300 nm
(L segment, 450-640 nm (S segment) and a width of 3-4 nm.
Nucleocapsid contains a polymerase complex and a nucleoprotein
complex. Nucleocapsids are organized in closed circles and
display a linear array of nucleosomal subunits (when they are
isolated and free of contaminating host ribosomes).
Physicochemical and Physical Properties
Virions have a buoyant density in
CsCl of 1.19-1.2 g cm
-3; sucrose of 1.17-1.18 g
cm
-3; amidotrizoate compounds of 1.14 g
cm
-3. The sedimentation coefficient is 325-500
S20w. The thermal inactivation point (TIP) is
at 56°C. Under
in vitro conditions virions are stable
when stored at -70°C; inactivated in acid environment of pH
5.5 (and below, inactivated in alkaline environment of pH 8.5
(and above). Virions are sensitive to treatment with organic
solvents (and infectivity is inactivated). The infectivity is
reduced after exposure to irradiation (UV and gamma-irradiation).
Nucleic Acid
The Mr of the genome constitutes 2% of the virion by
weight. The genome is segmented and consists of two segments of
linear, negative-sense to ambisense, single-stranded RNA. The
genome is transcriptional inactive. Minor species of non-genomic
nucleic acid are also found in virions. The encapsidated nucleic
acid is mainly of genomic origin, but virions may also contain
subgenomic RNA and nucleic acid of host origin including three
molecules of host rRNA (of cellular origin with sedimentation
coefficients of 28S, 18S and 4-6S and three subgenomic mRNA
(species presumably associated with encapsidated ribosomes)
derived from genomic S RNA (for the precursor of protein N and
the precursor of protein GPC), or L RNA (for the Z protein). RNA
segments are not homologous. The complete genome is about
10000-11000 nucleotides long. The genome has a guanine + cytosine
content of 40-45 %. The genome has a virus coded terminal protein
which is circular, but not covalently closed. Nucleotide
sequences at the 3'-terminus are largely complementary to similar
regions on the 5' end. The 5'-end of the genome does not have
cap. The 3'-terminus has conserved nucleotide sequences; in all
segments and species of same genus; sequence has 19-30
nucleotides in length; in S RNA. The intergenic region has S a
hairpin configuration (potential depending on virus). The
multipartite genome is encapsidated, each segment in a separate
nucleocapsid, and the nucleocapsids are surrounded by one
envelope. Each virion contains multiple copies of the genome;
often segments of the genome in non-equimolar proportions (due to
frequent packaging of S RNA strands).
Genome Organization and Replication
Virions attach to undefined receptors to enter host cells
via the endosomal route.
The process of intracellular uncoating of virions occurs in
the cytoplasm and the viral nucleic acid is delivered to the cell
cytoplasm, the site of mRNA transcription.
Transcription: Virus
transcription is temporally regulated. Early genes are expressed
during genome uncoating. Non-structural proteins involved in
transcription. The viral genome is transcribed from the viral
sense strand from the 3' end, or from the 5' end.
The viral genome is transcribed by a viral RNA-dependent RNA
polymerase into 2 mRNA(s) (N and L mRNA). The transcribed mRNAs
are subgenomic in a viral-complementary sense. Viral mRNA(s)
is/are transcribed with no overlaps; in an ambisense coding
arrangement; synthesized from all RNA segments.
Specific termination sequences have been identified.
Termination is caused by characteristic GC-rich, strongly
base-paired stem loop-structure.
Coding Strategy of Segment 1:
RNA-L exhibits an ambisense coding strategy. That encode(s)
structural proteins. Encodes 2 structural protein(s), namely a
polymerase complex (L protein, and Z protein). Structural
proteins are encoded in the viral-complementary sense
sequence.
Coding Strategy of Segment 2:
RNA-S. Exhibits an ambisense coding strategy. Contains 2 ORF(s).
Encode(s) structural proteins. Encodes 2 structural protein(s).
The sequence encodes GPC a glycoprotein precursor and a
non-glycosylated polypeptide (N). The sequence encodes GPC.
Structural proteins are encoded in the viral sense sequence. Part
of sequence. Acts as a template for synthesis of viral mRNA. A
non-glycosylated polypeptide. N. Translational units do not
overlap. Sequence has a. Intergenic non-coding region can form
hairpin configuration(s).
Translation: Envelope
glycoproteins. Are modified by post-translational processes. Are
processed to contain complex glycans. Including proteolytic
cleavage. Post-translational processes occur during transport. To
the plasma membrane.
The genome replicates in the cytoplasm. Genome replication
involves RNA-directed RNA synthesis; occurs through a single
stranded replicative intermediate involving a rolling circle
mechanism. The rolling circle mechanism generates complementary
intermediate forms referred to as the antigenome. The process of
genome replication may involve a slippage mechanism during
initiation of transcription termination signals. At an early
stage, templates are involved in the sysnthesis of a full-length
RNA replication. Replication in vitro is sensitive to
amantadine, alpha-amanitin, glucosamine, and
thiosemicarbazones.
Replication cycle The
virus has the ability to form gene reassortment. Gene
reassortment occurs during mixed infections; involving virus of
the same strain; involving virus from a different species; but
not between a different; species. Reassortment includes genomic
sequence segments that are diploid, or multiploid.
The precursor of envelope protein is found in the infected
cell cytoplasm. Viral proteins accumulate in the cytoplasm.
Virions accumulate in the cell cytoplasm.
Assembly and Egress:
Capisd proteins assemble with viral nucleic acid to form the
virion. Viruses assemble at the cell membrane.
Maturation: Virions
mature by budding through and by fusion with plasma membranes on
the cell surface in the vicinity of ribosomes in the
cytoplasm.
Release: Host cells
remain intact. Virus is released from host cell by budding
through the cell membrane; and acquisition of an envelope. Virus
is released from host cell without causing death. The virus
envelope is acquired from the host cell by budding off the cell
membrane and is assembled in the cytoplasm.