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Genome Information for Pelargonium x hortorum
Transcriptome sequencing (RNA-seq) on non-model organisms is becoming increasing popular and has been applied in many research areas.
More...Transcriptome sequencing (RNA-seq) on non-model organisms is becoming increasing popular and has been applied in many research areas. The wide use of RNA-seq and various sequencing platforms and assemblers calls for a thorough comparison of the most popular assemblers for the different platforms in terms of data quality, cost and time. We have conducted a cross-platform comparison of Pelargonium x hortorum transcriptome assembly using the Illumina and Roche/454 sequencing platforms with five different assemblers (Newbler, MIRA, SOAPdenovo, SOAPtrans, Trinity).
Less...| Accession | PRJNA167138 |
| Data Type | Transcriptome or Gene expression |
| Scope | Monoisolate |
| Organism | Pelargonium x hortorum[Taxonomy ID: 4031] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Geraniales; Geraniaceae; Pelargonium; Pelargonium x hortorum |
| Submission | Registration date: 20-May-2012
University of Texas at Austin |
| Related Resources | |
| Relevance | Evolution |
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