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7 additional projects are components of the Acid Mine Drainage Metagenomes from Multiple Locations on Iron Mountain.
Samples of pink biofilm and associated acid mine drainage were collected from the Richmond Mine, Iron Mountain, CA, from the Ultra Back A (UBA) site in June 2005. Iron Mountain is located at 40 deg 40' 38.42'' N and 122 deg 31' 19.90'' W (elevation ~ 3,100 ft). The UBA biofilm was subaerial, collected from the base of a ~2 m high pile of pyrite sediment over which pH 1.1, 41 deg C acid mine drainage solution was flowing.
The first version of this project has a partial genome of Leptospirillum rubarum that dominates this biofilm (Genome Project 18795). A second partial genome from Leptospirillum ferrodiazotrophum is present in Genome Project 37907.
| Accession | PRJNA163501 |
| Type | Umbrella Metagenome project (Subtype:Metagenome) |
| Organism | mine drainage metagenome[Taxonomy ID: 410659] unclassified sequences; metagenomes; ecological metagenomes; mine drainage metagenome |
| Submission | Registration date: 7-May-2012
|
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 279 |
| WGS master | 2 |
| SRA Experiments | 2 |
| Capillary Traces (Trace Archive) | 1 |
| Protein Sequences | 5259 |
| Publications |
| PubMed | 3 |
| PMC | 2 |
| Other datasets |
| BioSample | 2 |
| Assembly | 1 |
UBA Acid Mine Drainage Biofilm Metagenome encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Scaffolds |
1
|
|
| Metagenomic assembly | 2 |
|