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Accession: PRJNA160145 ID: 160145

Homo sapiens (human)

Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in Acute Myeloid Leukemia

See Genome Information for Homo sapiens
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Here we used Illumina NGS for high-throughput profiling of the DNA methylome in two human colon cancer derived cell lines, two human normal bone marrow CD34+ controls and in five human Acutre Myeloid Leukeima patient samples. More...
AccessionPRJNA160145; GEO: GSE37454
Data TypeEpigenomics
ScopeMultiisolate
OrganismHomo sapiens[Taxonomy ID: 9606]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens
Publications
  • Li S et al., "An optimized algorithm for detecting and annotating regional differential methylation.", BMC Bioinformatics, 2013;14 Suppl 5:S10
  • Akalin A et al., "Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia.", PLoS Genet, 2012;8(6):e1002781
SubmissionRegistration date: 1-Jun-2012
Weill Cornell Medical College
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments19
Publications
PubMed2
PMC2
Other datasets
BioSample19
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes337
SRA Data Details
ParameterValue
Data volume, Gbases75
Data volume, Mbytes47798

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