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Accession: PRJNA157275 ID: 157275

Drosophila melanogaster (fruit fly)

Gene expression after single and dual insulator protein knock-downs in Drosophila Kc cells.

See Genome Information for Drosophila melanogaster
Transcriptional changes assayed with two bilogical replicates in wild type and RNAi mediated insulator knock-downs RNAi mediated insulator knock-downs cause changes in the H3K27me3 levels and spread of Topoisomerase II In order to understand the role of insulators in gene expression and regulation we used Drosophila Kc cells to knock-down single and multiple insulators in combination to assay for transcriptional changes. More...
AccessionPRJNA157275; GEO: GSE36944
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismDrosophila melanogaster[Taxonomy ID: 7227]
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora; Drosophila melanogaster
PublicationsVan Bortle K et al., "Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains.", Genome Res, 2012 Nov;22(11):2176-87
SubmissionRegistration date: 18-Jun-2012
Biology, Emory University
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Publications
PubMed1
PMC1
Other datasets
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Spots299466
Data volume, Processed Mbytes6
Data volume, Supplementary Mbytes41

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