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1 additional project is a component of the Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA.
As a reference dataset to compare BisChIP-seq and other methylated DNA capture experiments against, we have collected Illumina 450k to profile CpG methylation status on native DNA.
Overall design: Illumina 450k array for LNCaP and PrEC cell lines
| Accession | PRJNA156409; GEO: GSE34340 |
| Data Type | Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Statham AL et al., "Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.", Genome Res, 2012 Jun;22(6):1120-7 |
| Submission | Registration date: 12-Dec-2011
Institute of Molecular Life Sciences, University of Zuerich |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 2913462 |
| Data volume, Processed Mbytes | 64 |
| Data volume, Supplementary Mbytes | 12 |