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Genome Information for Homo sapiens
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1 additional project is a component of the Expression and DNA methylation of colon cancer cell lines.
We combined gene expression experiments in response to HDAC inhibitor Depsipeptide with DNA methylation level to assess gene reactivation arising from hypermethylated promoters.
Overall design: We did one experiment with 1 untreated and 1 treated batch of cells
| Accession | PRJNA156387; GEO: GSE34427 |
| Data Type | Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Raynal NJ et al., "DNA methylation does not stably lock gene expression but instead serves as a molecular mark for gene silencing memory.", Cancer Res, 2012 Mar 1;72(5):1170-81 |
| Submission | Registration date: 4-Apr-2012
Fels Institute for Cancer and Molecular Biology, Temple University |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 44674 |
| Data volume, Processed Mbytes | 1 |
| Data volume, Supplementary Mbytes | 12 |