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Accession: PRJNA156201 ID: 156201

Mus musculus (house mouse)

The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo (ChIP-seq data)

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This project is a component of the The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo
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1 additional project is a component of the The transcription factor CDX2 maintains active enhancer in intestinal villus cells in vivo.
47588 additional projects are related by organism.
We established whether partner transcription factor binding, chromatin structure, or gene expression is compromised upon loss of partner factors cdx2 or hnf4a in mouse intestinal villi. More...
AccessionPRJNA156201; GEO: GSE34566
Data TypeEpigenomics
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
Publications
  • San Roman AK et al., "Transcription factors GATA4 and HNF4A control distinct aspects of intestinal homeostasis in conjunction with transcription factor CDX2.", J Biol Chem, 2015 Jan 16;290(3):1850-60
  • Verzi MP et al., "Intestinal master transcription factor CDX2 controls chromatin access for partner transcription factor binding.", Mol Cell Biol, 2013 Jan;33(2):281-92
SubmissionRegistration date: 20-Dec-2011
Verzi, Genetics, Rutgers, the State University of New Jersey
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments11
Publications
PubMed2
PMC2
Other datasets
BioSample11
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes19
SRA Data Details
ParameterValue
Data volume, Gbases11
Data volume, Mbytes6545

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