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Accession: PRJNA155303 ID: 155303

Cryptococcus neoformans

RNA-Seq analysis of ada2Δ, nrg1Δ and cir1Δ and KN99α wildtype cells in capsule inducing and non-inducing conditions

See Genome Information for Cryptococcus neoformans
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This project is a component of the Toward an integrated model of capsule regulation in Cryptococcus neoformans
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2 additional projects are components of the Toward an integrated model of capsule regulation in Cryptococcus neoformans.
609 additional projects are related by organism.
To contextualize the cryptococcal Spt-Ada-Gcn5 Acetyltransferase (SAGA) member Ada2 in the capsule regulatory network, RNA-Seq was performed on wildtype, ada2Δ and two other transcription factors, nrg1Δ and cir1Δ, which like ada2Δ are also defective for capsule formation, virulence and filamentation. More...
AccessionPRJNA155303; GEO: GSE32049
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismCryptococcus neoformans[Taxonomy ID: 5207]
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans
PublicationsHaynes BC et al., "Toward an integrated model of capsule regulation in Cryptococcus neoformans.", PLoS Pathog, 2011 Dec;7(12):e1002411
SubmissionRegistration date: 1-Jan-2012
Michael Brent, Computer Science, Washington University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments20
Publications
PubMed1
PMC1
Other datasets
BioSample20
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes482
SRA Data Details
ParameterValue
Data volume, Gbases4
Data volume, Mbytes2153

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