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Accession: PRJNA13878 ID: 13878

Capsella rubella

Capsella rubella Genome sequencing and assembly

See Genome Information for Capsella rubella
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11 additional projects are related by organism.

DOE Joint Genome Institute has sequenced the genome of C. rubella. Comparative analysis of the genomes of the two closely related species will be useful in understanding intra-species polymorphisms for A. thaliana.

AccessionPRJNA13878
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismCapsella rubella[Taxonomy ID: 81985]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella
PublicationsSlotte T et al., "The Capsella rubella genome and the genomic consequences of rapid mating system evolution.", Nat Genet, 2013 Jul;45(7):831-5
SubmissionRegistration date: 19-Apr-2013
DOE Joint Genome Institute
Related Resources
Locus Tag PrefixCARUB
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)774
WGS master1
SRA Experiments73
Capillary Traces (Trace Archive)1
Protein Sequences28713
Publications
PubMed1
Other datasets
BioSample6
Assembly1
Assembly details:
AssemblyLevelWGSBioSampleTaxonomy
GCA_000375325.1ScaffoldANNY00000000SAMN02981483
Capsella rubella
SRA Data Details
ParameterValue
Data volume, Gbases112
Data volume, Tbytes0.46
Related RefSeq Project
PRJNA230563 : Capsella rubella RefSeq project

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