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Accession: PRJNA13770 ID: 13770

Oryza punctata cultivar:IRGC:105690

OMAP clone end sequence project for Oryza punctata

See Genome Information for Oryza punctata
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This project is a component of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice
This project is a component of the Comparison of transposable elements across the various genome types of the Oryza genus
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4 additional projects are related by organism.
15 additional projects are components of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice.
14 additional projects are components of the Comparison of transposable elements across the various genome types of the Oryza genus.
Oryza punctata is a wild rice species native to Africa. It has a BB genome. Breeders are interested because of demonstrated resistance to bacterial blight and brown plant hoppers. More...
AccessionPRJNA13770
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismOryza punctata[Taxonomy ID: 4537]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata
PublicationsZuccolo A et al., "Transposable element distribution, abundance and role in genome size variation in the genus Oryza.", BMC Evol Biol, 2007 Aug 29;7:152
SubmissionRegistration date: 19-Feb-2014
The Oryza Map Alignment Project (OMAP)
- Arizona Genomics Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3159
WGS master2
Genomic DNA3144
SRA Experiments30
Publications
PubMed1
PMC1
Other datasets
BioSample7
Assembly2
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases207
Data volume, Tbytes0.14

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