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Accession: PRJNA13765 ID: 13765

Oryza glaberrima strain:IRGC: 96717 (African rice)

One organism in the OMAP project to determine genome sequence of genome relatives of Oryza sativa

See Genome Information for Oryza glaberrima
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This project is a component of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice
This project is a component of the Comparison of transposable elements across the various genome types of the Oryza genus
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15 additional projects are related by organism.
15 additional projects are components of the The Oryza Map Alignment Project is a comparative genomics project for all ten genome types in rice.
14 additional projects are components of the Comparison of transposable elements across the various genome types of the Oryza genus.
As part of the OMAP project a large insert BAC library has been developed for O. More...
AccessionPRJNA13765
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismOryza glaberrima[Taxonomy ID: 4538]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima
PublicationsZuccolo A et al., "Transposable element distribution, abundance and role in genome size variation in the genus Oryza.", BMC Evol Biol, 2007 Aug 29;7:152
SubmissionRegistration date: 8-Jul-2010
The Oryza Map Alignment Project (OMAP)
- Arizona Genomics Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3507
WGS master1
Genomic DNA3494
SRA Experiments23
Publications
PubMed1
PMC1
Other datasets
BioSample25
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_000147395.3ChromosomeADWL00000000
12
SAMN02981267
Oryza glaberrima
SRA Data Details
ParameterValue
Data volume, Gbases515
Data volume, Tbytes0.33

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