Using a pipeline that combines the local/global approach of the Berkeley Genome Pipeline and the LAGAN program, this group developed a fully automated pipeline to align the human, mouse, and rat genomes.
| Accession | PRJNA13705 |
| Type | Umbrella Comparative genomics project (Subtype:Comparative genomics) |
| Organism | Mammalia[Taxonomy ID: 40674] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia |
| Publications | Brudno M et al., "Automated whole-genome multiple alignment of rat, mouse, and human.", Genome Res, 2004 Apr;14(4):685-92 |
| Submission | Registration date: 1-Apr-2005
Stanford University |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 1127 |
| WGS master | 2 |
| Genomic DNA | 1 |
| Protein Sequences | 13 |
| Publications |
| PubMed | 3 |
| PMC | 1 |
| Other datasets |
| BioSample | 4 |
| Assembly | 2 |
Mammalia encompasses the following 2 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA13183 | Contigs | Mus musculus | Genome sequence for Mus musculus (Mouse Genome Sequencing Consortium) | | PRJNA10629 | Chromosomes | Rattus norvegicus | Genome sequencing by Rat Genome Sequencing Consortium (Rat Genome Sequencing Consortium) |
|