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Accession: PRJNA12348 ID: 12348

Xenopus tropicalis strain:Nigerian (tropical clawed frog)

Xenopus tropicalis

See Genome Information for Xenopus tropicalis

The Xenopus (Silurana) tropicalis genome has been sequenced to ~7.6X depth.
Whole genome shotgun (WGS) trace files are available from NCBI's Trace Archive.
AccessionPRJNA12348
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismXenopus tropicalis[Taxonomy ID: 8364]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis
Publications
  • Hellsten U et al., "The genome of the Western clawed frog Xenopus tropicalis.", Science, 2010 Apr 30;328(5978):633-6
  • Lowe TM et al., "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.", Nucleic Acids Res, 1997 Mar 1;25(5):955-64
SubmissionRegistration date: 13-Nov-2009
DOE Joint Genome Institute
Related Resources
Locus Tag PrefixXENTR
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)6822
WGS master1
SRA Experiments1
Protein Sequences38800
Publications
PubMed2
PMC2
Other datasets
BioSample1
Assembly1
SRA Data Details
ParameterValue
Data volume, Mbases125
Data volume, Mbytes311
Related RefSeq Project
PRJNA205740 : Xenopus (Silurana) tropicalis RefSeq Genome

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