ID 1076250 - BioProject

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Accession: PRJNA1076250 ID: 1076250

Canadian Genomics R&D Initiative on AMR One Health -- Bacterial Isolates

Resistance to antimicrobial medicines (antimicrobial resistance, AMR) is an important public health challenge. In particular, the development of resistance to antimicrobials by bacterial and fungal pathogens that were formerly sensitive poses a great threat to human and animal health. The GRDI AMR project maps the development and transit of AMR through healthcare, animals, plants, wastewater and the environment. Genomics approaches including metagenomics, whole-genome sequencing and genomic epidemiology are applied to inform strategies for reducing the spread of AMR https://grdi.canada.ca/en

Accession	PRJNA1076250
Type	Umbrella project
Grants	"The GRDI Shared priority project on antimicrobial resistance, One Health" (Grant ID GRDI-AMR-One-Health, Government of Canada, Genomics Research and Development Initiative (GRDI))
Submission	Registration date: 13-Feb-2024 GRDI Shared Priorities Project on AMR - Government of Canada
Relevance	One Health: Agricultural, Environmental, Medical

Project Data:

Resource Name	Number of Links
Publications
PubMed	3
PMC	3
Other datasets
Assembly	155

SRA Data Details

Parameter	Value
Data volume, Gbases	3,246
Data volume, Tbytes	1.31

This project encompasses the following 24 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Complete genome
Scaffolds
Contigs
SRA or Trace
No data links
Total

2
1
7
10
4
24

BioProject accession	Assembly level	Name	Title
PRJNA1450058	Complete genome	AMR isolates from Canadian wastewater and biosolids	AMR isolates from Canadian wastewater and biosolids (Canadian Food Inspection...)
PRJNA1069227	Contigs	Aeromonas salmonicida from Alberta	Aeromonas salmonicida from Alberta (McGill University)
PRJNA1321385	SRA or Trace	BC dairy farm and wastewater bacterial isolates	BC dairy farm and wastewater bacterial isolates (Agriculture and Agri-Food...)
PRJNA1298282	Contigs	Bacillus cereus	Bacillus strain:RAS-11-1 Genome sequencing (Agriculture and Agri-Food...)
PRJNA966974	SRA or Trace	Canadian Microbiological Baseline Study of Broiler Chicken	Canadian Microbiological Baseline Study of Broiler Chicken (Canadian Food Inspection...)

List all 24 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA1450058	Complete genome	AMR isolates from Canadian wastewater and biosolids	AMR isolates from Canadian wastewater and biosolids (Canadian Food Inspection...)
PRJNA1069227	Contigs	Aeromonas salmonicida from Alberta	Aeromonas salmonicida from Alberta (McGill University)
PRJNA1321385	SRA or Trace	BC dairy farm and wastewater bacterial isolates	BC dairy farm and wastewater bacterial isolates (Agriculture and Agri-Food...)
PRJNA1298282	Contigs	Bacillus cereus	Bacillus strain:RAS-11-1 Genome sequencing (Agriculture and Agri-Food...)
PRJNA966974	SRA or Trace	Canadian Microbiological Baseline Study of Broiler Chicken	Canadian Microbiological Baseline Study of Broiler Chicken (Canadian Food Inspection...)
PRJNA1163406	SRA or Trace	Clostridioides difficile	Clostridioides difficile from Canadian retail meat (Government of Canada)
PRJNA1298876	Contigs	Commensal Bacteria from Skin Mucus of Atlantic Salmon (Salmo salar) Raised in Flow-Through Systems	Commensal Bacteria from Skin Mucus of Atlantic Salmon (Salmo salar) Raised in Flow-Through Systems (Agriculture and Agri-Food...)
PRJNA1070647	SRA or Trace	ESKAPEE Pathogens from Foods	ESKAPEE Pathogens from Foods (Canadian Food Inspection...)
PRJNA1143549	Scaffolds	Enterobacteriaceae	Impact of in-feed cranberry by-products and fresh alfalfa silage exposition on sow and piglet gut microbiome and AMR profile (Governement of Canada)
PRJNA1345748	SRA or Trace	Enterococcus	Enterococcus from dairy cows, wastewater and the environment in British Columbia (Agriculture and Agri-Food...)
PRJNA1378336	Complete genome	Enterococcus (novel species)	Ten novel species of Enterococcus recovered from dairy, swine, and imported foods in Canada (Agriculture and Agri-Food...)
PRJNA1328809	SRA or Trace	Escherichia coli	Generic Escherichia coli from dairy cows, wastewater and the environment in British Columbia (Agriculture and Agri-Food...)
PRJNA1450717	No data links	Escherichia coli	ESBL Escherichia coli from dairy cows, wastewater and the environment in British Columbia (Agriculture and Agri-Food...)
PRJNA1466331	No data links	Escherichia coli	One Health Genomic Surveillance of Escherichia coli: A GRDI-AMR Initiative Using Illumina Whole Genome Sequencing (Canadian Food Inspection...)
PRJNA1472114	No data links	Escherichia coli	Escherichia coli Genome sequencing and assembly (Canadian Food Inspection...)
PRJNA1308680	Contigs	Follow-Up Agricultural Surface Water Sampling in South-Western Ontario, Canada	Follow-Up Agricultural Surface Water Sampling in South-Western Ontario, Canada (Agriculture and Agri-Food...)
PRJNA1423773	SRA or Trace	Klebsiella WGS for One Health Survey AAFC London	Klebsiella WGS for One Health Survey AAFC London (Agriculture & Agri-Food Canada)
PRJNA1466328	No data links	Klebsiella pneumoniae	One Health Genomic Surveillance of Klebsiella pneumoniae: A GRDI-AMR Initiative Using Whole Genome Sequencing (Canadian Food Inspection...)
PRJNA1298358	SRA or Trace	Pseudoalteromonas from Green Sea Urchin (Strongylocentrotus droebachiensis)	Pseudoalteromonas from Green Sea Urchin (Strongylocentrotus droebachiensis) (Agriculture and Agri-Food...)
PRJNA1327943	SRA or Trace	Salmonella enterica	A One Health comparative genomic assessment of Salmonella enterica isolates from a peri-urban agricultural region of Canada (Bureau of Microbial Hazards...)
PRJNA1143535	SRA or Trace	Salmonella enterica subsp. enterica serovar Kentucky	Salmonella enterica subsp. enterica serovar Kentucky strain:2015036 (Health Canada)
PRJNA1220114	Contigs	Shewanella oncorhynchi FD-1	Shewanella oncorhynchi FD-1 (Agriculture and Agri-Food...)
PRJNA1298336	Contigs	Shewanella, Psychrobacter and Photobacterium from BC Marine Sediment	Shewanella, Psychrobacter and Photobacterium from BC Marine Sediment (Agriculture and Agri-Food...)
PRJNA1156916	Contigs	Whole genome sequencing of bacterial isolates from a trout farm in Alberta	Whole genome sequencing of bacterial isolates from a trout farm in Alberta (McGill University)

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