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Allo_otit_ATCC_51267_V1

Organism name:
Alloiococcus otitis ATCC 51267 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 51267
BioSample:
SAMN02463901
BioProject:
PRJNA52161
Submitter:
Broad Institute
Date:
2012/11/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000315445.1 (latest)
RefSeq assembly accession:
GCF_000315445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGXA01
Assembly method:
allpaths v. R39980
Genome coverage:
115x
Sequencing technology:
Illumina

IDs: 503308 [UID] 502068 [GenBank] 503308 [RefSeq]

See Genome Information for Alloiococcus otitis

There are 4 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Huys, G. (BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Faculty of Sciences, Ghent University K.L. Ledeganckstraat 35, ... B-9000 Gent, Belgium).
Bacteria provided by Huys, G. (BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Faculty of Sciences, Ghent University K.L. Ledeganckstraat 35, B-9000 Gent, Belgium). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length1,806,596
Total ungapped length1,784,056
Gaps between scaffolds0
Number of scaffolds8
Scaffold N50485,091
Scaffold L502
Number of contigs35
Contig N5084,992
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)35

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,806,59681,784,056485,091270

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alloiococcus otitis ATCC 51267Alloiococcus otitis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000245815.1Dolosigranulum pigrumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.510.730.71

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected