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ASM926v1

Organism name:
Rhizobium johnstonii 3841 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Biovar: viciae 3841
Infraspecific name:
Strain: 3841
BioSample:
SAMEA1705944
BioProject:
PRJNA344
Submitter:
Sanger Institute
Date:
2006/09/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000009265.1 (latest)
RefSeq assembly accession:
GCF_000009265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 30808 [UID] 10068 [GenBank] 30808 [RefSeq]

See Genome Information for Rhizobium johnstonii

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/30/2023 12:03:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,499
CDSs (total)::7,434
Genes (coding)::7,202
CDSs (with protein)::7,202
Genes (RNA)::65
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::232
CDSs (without protein)::232
Pseudo Genes (ambiguous residues)::0 of 232
Pseudo Genes (frameshifted)::120 of 232
Pseudo Genes (incomplete)::168 of 232
Pseudo Genes (internal stop)::29 of 232
Pseudo Genes (multiple problems)::75 of 232
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,751,309
Total ungapped length7,751,309
Total number of chromosomes and plasmids7

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009275.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AM236080.1=NC_008380.1
Plasmid pRL7AM236081.1=NC_008382.1
Plasmid pRL8AM236082.1=NC_008383.1
Plasmid pRL9AM236083.1=NC_008379.1
Plasmid pRL10AM236084.1=NC_008381.1
Plasmid pRL11AM236085.1=NC_008384.1
Plasmid pRL12AM236086.1=NC_008378.1

Assembly statistics

MoleculeTotal
Length
All7,751,309
Chromosome 5,057,142
Plasmid pRL7151,564
Plasmid pRL8147,463
Plasmid pRL9352,782
Plasmid pRL10488,135
Plasmid pRL11684,202
Plasmid pRL12870,021

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhizobium johnstonii 3841Rhizobium johnstonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025941625.1Rhizobium acaciaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.0581.6779.01

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected