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BCW_34

Organism name:
Burkholderia pseudomallei MSHR5609 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MSHR5609
BioSample:
SAMN02981702
BioProject:
PRJNA230990
Submitter:
Los Alamos National Laboratory
Date:
2014/11/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000773155.1 (latest)
RefSeq assembly accession:
GCF_000773155.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQDJ01
Assembly method:
IDBA v. 1.1.1
Expected final version:
yes
Genome coverage:
613.0x
Sequencing technology:
Illumina

IDs: 220201 [UID] 1372318 [GenBank] 1639008 [RefSeq]

See Genome Information for Burkholderia pseudomallei

Pathogen Detection Resources

There are 3253 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length7,186,784
Total ungapped length7,186,784
Number of contigs149
Contig N5092,157
Contig L5026
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)149

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,186,7841497,186,78492,15700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia pseudomallei MSHR5609Burkholderia pseudomallei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2494.5895.99
Best-match type99.2494.5895.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna