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ASM22033v1

Organism name:
Sporosarcina newyorkensis 2681 (firmicutes)
Infraspecific name:
Strain: 2681
BioSample:
SAMN00262641
Submitter:
Baylor College of Medicine
Date:
2011/07/08
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000220335.1 (latest)
RefSeq assembly accession:
GCF_000220335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFPZ01
Assembly method:
Newbler Assembler v. 2.3-04192010
Genome coverage:
22.11x
Sequencing technology:
454

IDs: 295528 [UID] 294568 [GenBank] 295528 [RefSeq]

See Genome Information for Sporosarcina newyorkensis

History (Show revision history)

Comment

Sporosarcina newyorensis 2681

 Strain source, body site: Blood

 Inquiries should be directed to microbe@hgsc.bcm.tmc.edu

 This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. This sequence is generated as ... a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.

 The sequenced strain was obtained from Kimberlee Musser (contact information: Wadsworth Center, New York State Department of Health, P.O. Box 22002, Albany, NY 12201). The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data. The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifescience Newbler assembler. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb).  more

Global statistics

Total sequence length3,727,356
Total assembly gap length100,132
Gaps between scaffolds0
Number of scaffolds42
Scaffold N50954,874
Scaffold L502
Number of contigs162
Contig N5050,051
Contig L5023
Total number of chromosomes and plasmids0

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,727,356423,627,224954,8741200