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B548

Organism name:
Rhodococcus sp. UFZ-B548 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
13
BioSample:
SAMEA6952529
BioProject:
PRJEB38476
Submitter:
HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.
Date:
2020/07/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_903819475.1 (latest)
RefSeq assembly accession:
GCF_903819475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAIJDS01
Genome coverage:
100x

IDs: 7710721 [UID] 21179758 [GenBank] 21543688 [RefSeq]

See Genome Information for Rhodococcus sp. UFZ-B548

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length7,838,625
Total ungapped length7,837,825
Gaps between scaffolds0
Number of scaffolds158
Scaffold N50119,117
Scaffold L5020
Number of contigs166
Contig N50115,525
Contig L5022
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)158

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,838,6251587,837,825119,11780

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhodococcus sp. UFZ-B548Rhodococcus sp. UFZ-B548

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001552595.1Rhodococcus erythropolistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.6275.7790.13

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna