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IMG-taxon 2738543001 annotated assembly

Organism name:
Streptomyces sp. 2323.1 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 2323.1
BioSample:
SAMN06272775
BioProject:
PRJEB22324
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/09/19
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900221035.1 (latest)
RefSeq assembly accession:
GCF_900221035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
122x

IDs: 1209881 [UID] 5044698 [GenBank] 5077958 [RefSeq]

See Genome Information for Streptomyces sp. 2323.1

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/15/2021 05:25:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,050
CDSs (total)::6,963
Genes (coding)::6,755
CDSs (with protein)::6,755
Genes (RNA)::87
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::208
CDSs (without protein)::208
Pseudo Genes (ambiguous residues)::0 of 208
Pseudo Genes (frameshifted)::77 of 208
Pseudo Genes (incomplete)::159 of 208
Pseudo Genes (internal stop)::21 of 208
Pseudo Genes (multiple problems)::44 of 208
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,212,455
Total ungapped length8,212,355
Gaps between scaffolds0
Number of scaffolds1
Scaffold N508,212,455
Scaffold L501
Number of contigs1
Contig N508,212,355
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900221034.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT907981.1=NZ_LT907981.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome I8,212,45518,212,3558,212,45510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. 2323.1Streptomyces sp. 2323.1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004122735.1Streptomyces sioyaensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.0882.6286.46

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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