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IMG-taxon 2524614673 annotated assembly

Organism name:
Streptomyces sp. PgraA7 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PgraA7
BioSample:
SAMN02745831
BioProject:
PRJEB21380
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/06/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900187925.1 (latest)
RefSeq assembly accession:
GCF_900187925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FYEJ01
Genome coverage:
600x

IDs: 1140411 [UID] 4632858 [GenBank] 4637088 [RefSeq]

See Genome Information for Streptomyces sp. PgraA7

History (Show revision history)

Comment

Global statistics

Total sequence length8,317,680
Total ungapped length8,317,103
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50380,983
Scaffold L506
Number of contigs54
Contig N50291,629
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,317,680498,317,103380,98350

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. PgraA7Streptomyces sp. PgraA7

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008632535.1Streptomyces parvustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.6081.7985.18

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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