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IMG-taxon 2524614730 annotated assembly

Organism name:
Streptomyces sp. Amel2xC10 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Amel2xC10
BioSample:
SAMN02745830
BioProject:
PRJEB20424
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2017/04/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900177255.1 (latest)
RefSeq assembly accession:
GCF_900177255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FWZW01
Genome coverage:
138x

IDs: 1076701 [UID] 4390128 [GenBank] 4404478 [RefSeq]

See Genome Information for Streptomyces sp. Amel2xC10

History (Show revision history)

Comment

Global statistics

Total sequence length7,976,204
Total ungapped length7,976,194
Gaps between scaffolds0
Number of scaffolds53
Scaffold N50423,722
Scaffold L507
Number of contigs54
Contig N50375,417
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)53

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,976,204537,976,194423,72210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Amel2xC10Streptomyces sp. Amel2xC10

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648915.1Streptomyces phaeofacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.7772.9755.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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