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IMG-taxon 2695421014 annotated assembly

Organism name:
Streptomyces sp. 3214.6 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 3124.6
BioSample:
SAMN05444521
BioProject:
PRJEB18237
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/12/02
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900129855.1 (latest)
RefSeq assembly accession:
GCF_900129855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
152x

IDs: 1032821 [UID] 4218638 [GenBank] 4237168 [RefSeq]

See Genome Information for Streptomyces sp. 3214.6

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/15/2021 04:47:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,491
CDSs (total)::8,398
Genes (coding)::8,069
CDSs (with protein)::8,069
Genes (RNA)::93
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::329
CDSs (without protein)::329
Pseudo Genes (ambiguous residues)::0 of 329
Pseudo Genes (frameshifted)::107 of 329
Pseudo Genes (incomplete)::278 of 329
Pseudo Genes (internal stop)::15 of 329
Pseudo Genes (multiple problems)::67 of 329
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,375,551
Total ungapped length9,375,451
Gaps between scaffolds0
Number of scaffolds1
Scaffold N509,375,551
Scaffold L501
Number of contigs1
Contig N509,375,451
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900129854.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT670819.1=NZ_LT670819.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome I9,375,55119,375,4519,375,55110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. 3214.6Streptomyces sp. 3214.6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003112535.1Streptomyces rishiriensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.2657.6058.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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