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IMG-taxon 2616644941 annotated assembly

Organism name:
Streptomyces atratus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OK807
BioSample:
SAMN02787144
BioProject:
PRJEB17962
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900119365.1 (latest)
RefSeq assembly accession:
GCF_900119365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FPJO01
Genome coverage:
90x

IDs: 895671 [UID] 3747608 [GenBank] 3818748 [RefSeq]

See Genome Information for Streptomyces atratus

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length8,510,691
Total ungapped length8,504,417
Gaps between scaffolds0
Number of scaffolds103
Scaffold N50269,459
Scaffold L5011
Number of contigs117
Contig N50206,561
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)103

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,510,6911038,504,417269,459140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces atratusStreptomyces atratus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014648655.1Streptomyces atratustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649535.1Streptomyces gelaticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type90.8264.8156.09
Best-match type94.3170.8477.69

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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