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IMG-taxon 2609459763 annotated assembly

Organism name:
Streptomyces sp. cf124 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CF124
BioSample:
SAMN04487980
BioProject:
PRJEB17113
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900114955.1 (latest)
RefSeq assembly accession:
GCF_900114955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOUV01
Genome coverage:
114x

IDs: 880371 [UID] 3700468 [GenBank] 4893268 [RefSeq]

See Genome Information for Streptomyces sp. cf124

History (Show revision history)

Comment

Global statistics

Total sequence length9,995,208
Total ungapped length9,991,828
Gaps between scaffolds0
Number of scaffolds106
Scaffold N50302,548
Scaffold L5013
Number of contigs110
Contig N50254,880
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)106

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,995,2081069,991,828302,54840

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. cf124Streptomyces sp. cf124

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014930365.1Streptomyces caniscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.4592.4484.49

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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