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IMG-taxon 2654587880 annotated assembly

Organism name:
Streptomyces pini (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PL19
BioSample:
SAMN05192584
BioProject:
PRJEB17415
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900114215.1 (latest)
RefSeq assembly accession:
GCF_900114215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOSG01
Genome coverage:
79x

IDs: 883471 [UID] 3706688 [GenBank] 4893588 [RefSeq]

See Genome Information for Streptomyces pini

History (Show revision history)

Comment

Global statistics

Total sequence length6,338,888
Total ungapped length6,338,378
Gaps between scaffolds0
Number of scaffolds57
Scaffold N50282,394
Scaffold L508
Number of contigs58
Contig N50282,394
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,338,888576,338,378282,39410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces piniStreptomyces pini

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002811705.2Streptomyces barkulensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.3484.9684.57

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected
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