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IMG-taxon 2634166310 annotated assembly

Organism name:
Algibacter lectus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15365
BioSample:
SAMN04489722
BioProject:
PRJEB17200
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900112395.1 (latest)
RefSeq assembly accession:
GCF_900112395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FOLN01
Genome coverage:
267x

IDs: 882791 [UID] 3705328 [GenBank] 3913418 [RefSeq]

See Genome Information for Algibacter lectus

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,816,342
Total ungapped length4,814,226
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50356,440
Scaffold L504
Number of contigs34
Contig N50356,440
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,816,342334,814,226356,44010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Algibacter lectusAlgibacter lectus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004368925.1Algibacter lectussyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004368925.1Algibacter lectussyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9087.1889.17
Best-match type98.9087.1889.17

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna