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IMG-taxon 2693429904 annotated assembly

Organism name:
Rubrimonas cliftonensis (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15345
BioSample:
SAMN05444370
BioProject:
PRJEB16639
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900107585.1 (latest)
RefSeq assembly accession:
GCF_900107585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNQM01
Genome coverage:
189x

IDs: 868951 [UID] 3643258 [GenBank] 4890468 [RefSeq]

See Genome Information for Rubrimonas cliftonensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length4,864,068
Total ungapped length4,864,068
Number of contigs98
Contig N50247,776
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)98

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,864,068984,864,068247,77600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rubrimonas cliftonensisRubrimonas cliftonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023487995.1Limibaculum sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.956.577.40

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected