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IMG-taxon 2690315611 annotated assembly

Organism name:
Streptomyces sp. 2114.2 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2114.2
BioSample:
SAMN05428941
BioProject:
PRJEB16387
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900104935.1 (latest)
RefSeq assembly accession:
GCF_900104935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
149x

IDs: 866721 [UID] 3638788 [GenBank] 4891628 [RefSeq]

See Genome Information for Streptomyces sp. 2114.2

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/25/2022 04:46:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,787
CDSs (total)::7,699
Genes (coding)::7,528
CDSs (with protein)::7,528
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::171
CDSs (without protein)::171
Pseudo Genes (ambiguous residues)::0 of 171
Pseudo Genes (frameshifted)::73 of 171
Pseudo Genes (incomplete)::120 of 171
Pseudo Genes (internal stop)::23 of 171
Pseudo Genes (multiple problems)::41 of 171
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,620,263
Total ungapped length8,620,163
Gaps between scaffolds0
Number of scaffolds1
Scaffold N508,620,263
Scaffold L501
Number of contigs1
Contig N508,620,163
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_900104934.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ILT629768.1=NZ_LT629768.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome I8,620,26318,620,1638,620,26310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. 2114.2Streptomyces sp. 2114.2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014651155.1Streptomyces anthocyanicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.4192.4797.39

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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