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IMG-taxon 2667527439 annotated assembly

Organism name:
Actinacidiphila guanduensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 4.2022
BioSample:
SAMN05216259
BioProject:
PRJEB16229
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_900103985.1 (latest)
RefSeq assembly accession:
GCF_900103985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNIE01
Genome coverage:
72x

IDs: 863771 [UID] 3632878 [GenBank] 4893248 [RefSeq]

See Genome Information for Actinacidiphila guanduensis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length8,220,839
Total ungapped length8,220,815
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50462,703
Scaffold L507
Number of contigs35
Contig N50462,703
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced8,220,839338,220,815462,70320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinacidiphila guanduensisActinacidiphila guanduensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000745345.1Actinacidiphila yeochonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.1332.9634.66

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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