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IMG-taxon 2615840541 annotated assembly

Organism name:
Streptomyces sp. cf386 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CF386
BioSample:
SAMN04487981
BioProject:
PRJEB16215
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/10/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900103585.1 (latest)
RefSeq assembly accession:
GCF_900103585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FNHV01
Genome coverage:
113x

IDs: 866491 [UID] 3638328 [GenBank] 4893868 [RefSeq]

See Genome Information for Streptomyces sp. cf386

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length10,622,898
Total ungapped length10,620,003
Gaps between scaffolds0
Number of scaffolds56
Scaffold N50424,316
Scaffold L509
Number of contigs74
Contig N50254,710
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)56

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced10,622,8985610,620,003424,316180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. cf386Streptomyces sp. cf386

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003963535.1Streptomyces cyaneochromogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.0772.0771.69

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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