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IMG-taxon 2657245715 annotated assembly

Organism name:
Streptomyces sp. DpondAA-F4 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DpondAA-F4
BioSample:
SAMN04883147
BioProject:
PRJEB15212
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/08/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900095575.1 (latest)
RefSeq assembly accession:
GCF_900095575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMIG01
Genome coverage:
27x

IDs: 789371 [UID] 3429788 [GenBank] 4893168 [RefSeq]

See Genome Information for Streptomyces sp. DpondAA-F4

History (Show revision history)

Comment

Global statistics

Total sequence length7,354,500
Total ungapped length7,354,500
Number of contigs111
Contig N50129,868
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,354,5001117,354,500129,86800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. DpondAA-F4Streptomyces sp. DpondAA-F4

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000721185.1Streptomyces griseolustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.3368.2866.62

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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