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IMG-taxon 2657245721 annotated assembly

Organism name:
Streptomyces sp. Ncost-T10-10d (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Ncost-T10-10d
BioSample:
SAMN04883155
BioProject:
PRJEB14574
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900091955.1 (latest)
RefSeq assembly accession:
GCF_900091955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMDF01
Genome coverage:
20x

IDs: 789531 [UID] 3430108 [GenBank] 4893828 [RefSeq]

See Genome Information for Streptomyces sp. Ncost-T10-10d

History (Show revision history)

Comment

Global statistics

Total sequence length9,361,102
Total ungapped length9,361,102
Number of contigs244
Contig N5084,953
Contig L5034
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)244

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,361,1022449,361,10284,95300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Ncost-T10-10dStreptomyces sp. Ncost-T10-10d

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648655.1Streptomyces atratustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.4772.3668.94

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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