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IMG-taxon 2657245709 annotated assembly

Organism name:
Streptomyces sp. SolWspMP-5a-2 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SolWspMP-5a-2
BioSample:
SAMN04875601
BioProject:
PRJEB14563
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/08/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900091845.1 (latest)
RefSeq assembly accession:
GCF_900091845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMCI01
Genome coverage:
29x

IDs: 782001 [UID] 3386048 [GenBank] 4893528 [RefSeq]

See Genome Information for Streptomyces sp. SolWspMP-5a-2

History (Show revision history)

Comment

Global statistics

Total sequence length8,956,613
Total ungapped length8,956,613
Number of contigs400
Contig N5038,736
Contig L5075
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)400

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,956,6134008,956,61338,73600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. SolWspMP-5a-2Streptomyces sp. SolWspMP-5a-2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023516615.1Streptomyces panaciradicistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.7944.8742.22

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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