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IMG-taxon 2522125136 annotated assembly

Organism name:
Streptomyces sp. WMMB 714 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: WMMB 714
BioSample:
SAMN02745759
BioProject:
PRJEB14436
Submitter:
DOE - JOINT GENOME INSTITUTE
Date:
2016/08/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900090125.1 (latest)
RefSeq assembly accession:
GCF_900090125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FMHJ01
Genome coverage:
400x

IDs: 789831 [UID] 3430708 [GenBank] 3904838 [RefSeq]

See Genome Information for Streptomyces sp. WMMB 714

History (Show revision history)

Comment

Global statistics

Total sequence length6,594,919
Total ungapped length6,594,894
Gaps between scaffolds0
Number of scaffolds34
Scaffold N50488,805
Scaffold L506
Number of contigs35
Contig N50488,805
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,594,919346,594,894488,80510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. WMMB 714Streptomyces sp. WMMB 714

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014645895.1Streptomyces daqingensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.8689.3990.18

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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