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Streptomyces_sp_F1_v3

Organism name:
Streptomyces sp. F-1 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Isolate:
Streptomyces sp. F1
BioSample:
SAMEA3925434
BioProject:
PRJEB13412
Submitter:
LABORATORIO NACIONAL DE CIENCIA E TECNOLOGIA DO BI
Date:
2016/11/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_900079405.3 (latest)
RefSeq assembly accession:
GCF_900079405.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
FKJI03
Genome coverage:
165x

IDs: 893941 [UID] 3742508 [GenBank] 3743188 [RefSeq]

See Genome Information for Streptomyces sp. F-1

History (Show revision history)

Comment

Global statistics

Total sequence length8,142,296
Total ungapped length8,039,305
Gaps between scaffolds0
Number of scaffolds69
Scaffold N50296,926
Scaffold L508
Number of contigs80
Contig N50296,926
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)69

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,142,296698,039,305296,926110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. F-1Streptomyces sp. F-1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900104815.1Streptomyces misionensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3394.7689.91

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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