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ASM3624560v1

Organism name:
Algoriphagus sp. oki45 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:19877
Infraspecific name:
Strain: oki45
BioSample:
SAMD00635543
BioProject:
PRJDB16381
Submitter:
Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University
Date:
2023/08/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_036245605.1 (latest)
RefSeq assembly accession:
GCF_036245605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BTPC01
Assembly method:
Platanus_B v. 1.2.4
Genome coverage:
31x
Sequencing technology:
Illumina MiSeq

IDs: 21165791 [UID] 53278008 [GenBank] 55910298 [RefSeq]

See Genome Information for Algoriphagus sp. oki45

History (Show revision history)

Comment

Annotated by DFAST https://dfast.ddbj.nig.ac.jp/

Global statistics

Total sequence length4,617,600
Total ungapped length4,606,635
Gaps between scaffolds0
Number of scaffolds40
Scaffold N501,001,091
Scaffold L502
Number of contigs45
Contig N50555,621
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)40

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,617,600404,606,6351,001,09150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Algoriphagus sp. oki45Algoriphagus sp. oki45

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_036245625.1Algoriphagus confluentistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.0780.9474.36

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna