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ASM3131259v1

Organism name:
Methanolobus sediminis (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: FTZ6
BioSample:
SAMN37170651
BioProject:
PRJNA1009938
Submitter:
Shenzhen University
Date:
2023/09/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_031312595.1 (latest)
RefSeq assembly accession:
GCF_031312595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
570x
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 18438881 [UID] 47168748 [GenBank] 47213958 [RefSeq]

See Genome Information for Methanolobus sediminis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/26/2023 10:27:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,763
CDSs (total)::2,694
Genes (coding)::2,679
CDSs (with protein)::2,679
Genes (RNA)::69
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::55
ncRNAs::2
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::5 of 15
Pseudo Genes (incomplete)::8 of 15
Pseudo Genes (internal stop)::6 of 15
Pseudo Genes (multiple problems)::3 of 15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,798,037
Total ungapped length2,798,037
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_031312605.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP133592.1=NZ_CP133592.1
Plasmid pFTZ6-02CP133593.1=NZ_CP133593.1

Assembly statistics

MoleculeTotal
Length
All2,798,037
Chromosome 2,794,531
Plasmid pFTZ6-023,506

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanolobus sediminisMethanolobus sediminis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900100715.1Methanolobus vulcanitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.5473.7070.02

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected