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Source database (GenBank or RefSeq) File type

MsV1

Organism name:

Magnolia sinica (flowering plants)

Isolate:

HGM2019

BioSample:

SAMN33820282

BioProject:

PRJNA774088

Submitter:

Ori-Gene Co. Ltd.

Date:

2023/05/12

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_029962835.1 (latest)

RefSeq assembly accession:

GCF_029962835.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 2 unlocalized scaffolds on chromosome MT; chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JARNKS01

Assembly method:

SMARTdenovo v. 1.0

Expected final version:

yes

Genome coverage:

100.0x

Sequencing technology:

Oxford Nanopore PromethION

IDs: 16553711 [UID] 42588648 [GenBank] 44902048 [RefSeq]

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_029962835.1	≠	GCF_029962835.1	MsV1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,838,578,862
Total ungapped length	1,838,572,844
Gaps between scaffolds	0
Number of scaffolds	127
Scaffold N50	92,164,922
Scaffold L50	8
Number of contigs	199
Contig N50	44,871,976
Contig L50	14
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	127

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM057172.1	=	NC_080573.1	0
Chromosome 2	CM057173.1	=	NC_080574.1	0
Chromosome 3	CM057174.1	=	NC_080575.1	0
Chromosome 4	CM057175.1	=	NC_080576.1	0
Chromosome 5	CM057176.1	=	NC_080577.1	0
Chromosome 6	CM057177.1	=	NC_080578.1	0
Chromosome 7	CM057178.1	=	NC_080579.1	0
Chromosome 8	CM057179.1	=	NC_080580.1	0
Chromosome 9	CM057180.1	=	NC_080581.1	0
Chromosome 10	CM057181.1	=	NC_080582.1	0
Chromosome 11	CM057182.1	=	NC_080583.1	0
Chromosome 12	CM057183.1	=	NC_080584.1	0
Chromosome 13	CM057184.1	=	NC_080585.1	0
Chromosome 14	CM057185.1	=	NC_080586.1	0
Chromosome 15	CM057186.1	=	NC_080587.1	0
Chromosome 16	CM057187.1	=	NC_080588.1	0
Chromosome 17	CM057188.1	=	NC_080589.1	0
Chromosome 18	CM057189.1	=	NC_080590.1	0
Chromosome 19	CM057190.1	=	NC_080591.1	0
unplaced	n/a	n/a	n/a	108

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,838,578,862	127	1,838,572,844	92,164,922	72
Chromosome 1	141,926,363	1	141,926,191	141,926,363	2
Chromosome 2	140,208,898	1	140,208,774	140,208,898	1
Chromosome 3	130,767,470	1	130,767,062	130,767,470	5
Chromosome 4	116,114,175	1	116,113,721	116,114,175	5
Chromosome 5	115,679,843	1	115,679,776	115,679,843	1
Chromosome 6	105,460,429	1	105,460,301	105,460,429	2
Chromosome 7	96,479,365	1	96,479,050	96,479,365	4
Chromosome 8	92,164,922	1	92,164,368	92,164,922	6
Chromosome 9	91,695,436	1	91,694,408	91,695,436	12
Chromosome 10	88,541,654	1	88,541,197	88,541,654	5
Chromosome 11	85,446,948	1	85,446,850	85,446,948	1
Chromosome 12	84,602,008	1	84,601,071	84,602,008	11
Chromosome 13	84,263,445	1	84,263,057	84,263,445	6
Chromosome 14	82,624,792	1	82,624,648	82,624,792	2
Chromosome 15	77,824,990	1	77,824,648	77,824,990	4
Chromosome 16	73,967,413	1	73,967,413	73,967,413	0
Chromosome 17	73,752,208	1	73,752,096	73,752,208	2
Chromosome 18	72,189,508	1	72,189,508	72,189,508	0
Chromosome 19	68,996,385	1	68,996,095	68,996,385	3
unplaced	15,872,610	108	15,872,610	217,069	0

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MsV1

Pathogen Detection Resources

History (Show revision history)

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