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mMesDen1 primary haplotype

Organism name:
Mesoplodon densirostris (Blainville's beaked whale)
Isolate:
mMesDen1
Sex:
male
BioSample:
SAMN29828597
BioProject:
PRJNA873668
Submitter:
Vertebrate Genomes Project
Date:
2022/09/19
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_025265405.1 (latest)
RefSeq assembly accession:
GCF_025265405.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JANXIL01
Assembly method:
Hifiasm v. 0.16.1+galaxy1; purge_dups v. 1.2.5+galaxy3; Bionano solve v. 3.7.0+galaxy0; Salsa v. 2.3+galaxy2
Expected final version:
no
Genome coverage:
43.5x
Linked assembly:
GCA_025094165.1 (alternate pseudohaplotype of diploid)

IDs: 13846881 [UID] 36033498 [GenBank] 48193348 [RefSeq]

See Genome Information for Mesoplodon densirostris

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,683,391,478
Total ungapped length2,682,691,175
Gaps between scaffolds0
Number of scaffolds74
Scaffold N50125,805,690
Scaffold L508
Number of contigs171
Contig N5048,253,041
Contig L5018
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)74

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_025265415.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM046080.1=NC_082661.10
Chromosome 2CM046081.1=NC_082662.10
Chromosome 3CM046082.1=NC_082663.10
Chromosome 4CM046083.1=NC_082664.10
Chromosome 5CM046084.1=NC_082665.10
Chromosome 6CM046085.1=NC_082666.10
Chromosome 7CM046086.1=NC_082667.10
Chromosome 8CM046087.1=NC_082668.10
Chromosome 9CM046088.1=NC_082669.10
Chromosome 10CM046089.1=NC_082670.10
Chromosome 11CM046090.1=NC_082671.10
Chromosome 12CM046091.1=NC_082672.10
Chromosome 13CM046092.1=NC_082673.10
Chromosome 14CM046093.1=NC_082674.10
Chromosome 15CM046094.1=NC_082675.10
Chromosome 16CM046095.1=NC_082676.10
Chromosome 17CM046096.1=NC_082677.10
Chromosome 18CM046097.1=NC_082678.10
Chromosome 19CM046098.1=NC_082679.10
Chromosome 20CM046099.1=NC_082680.10
Chromosome XCM046100.1=NC_082681.10
Chromosome YCM046101.1=NC_082682.12
unplacedn/an/an/a49

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,683,375,131732,682,674,828125,805,690970
Chromosome 1Assembled molecule247,284,3601247,283,622247,284,36040
Chromosome 2Assembled molecule193,415,3491193,287,630193,415,34970
Chromosome 3Assembled molecule185,486,7661185,485,853185,486,76640
Chromosome 4Assembled molecule184,908,2881184,880,072184,908,28840
Chromosome 5Assembled molecule155,519,1271155,518,914155,519,12720
Chromosome 6Assembled molecule136,865,7261136,863,987136,865,726100
Chromosome 7Assembled molecule125,805,6901125,804,890125,805,69040
Chromosome 8Assembled molecule117,335,1951117,333,672117,335,19570
Chromosome 9Assembled molecule114,113,2111114,112,811114,113,21120
Chromosome 10Assembled molecule111,292,8101111,292,110111,292,81020
Chromosome 11Assembled molecule106,130,9361106,130,936106,130,93600
Chromosome 12Assembled molecule104,700,9201104,700,242104,700,92090
Chromosome 13Assembled molecule93,362,332193,361,93293,362,33220
Chromosome 14Assembled molecule91,985,674191,985,46191,985,67420
Chromosome 15Assembled molecule91,196,782191,195,92091,196,78210
Chromosome 16Assembled molecule88,733,150188,733,11688,733,15010
Chromosome 17Assembled molecule78,597,266178,596,56678,597,26620
Chromosome 18Assembled molecule67,049,709167,049,05767,049,70970
Chromosome 19Assembled molecule66,567,213166,567,01366,567,21310
Chromosome 20Assembled molecule45,032,744145,032,74445,032,74400
Chromosome XAssembled molecule142,130,3751141,952,332142,130,375150
Chromosome YAllAssembled moleculeUnlocalized scaffolds22,469,21012,710,7539,758,45731222,153,19212,710,7539,442,43912,710,75312,710,7536,823,000303000
unplacedAssembled molecule113,392,29849113,352,7563,674,95380
MoleculeTotal
Length
Mitochondrion MT16,347